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Showing 5851 to 5900 of 6881 works

New altitudinal record for white-lipped peccary Tayassu pecari (Link, 1795) in Ecuador, with notes about activity patte…

White-lipped peccaries (Tayassu pecari) represent a key element of trophic networks in tropical rainforest ecosystems by playing the dual role of consumer and prey. Despite their …

The Myriapoda of Halimun-Salak National Park (Java, Indonesia): overview and faunal composition

The myriapod fauna of the mega-diverse country of Indonesia is so far insufficiently known, with no species lists or determination keys. In order to obtain an overview of the faun…

Using Malaise traps for collecting Lepidoptera (Insecta), with notes on the preparation of Macrolepidoptera from ethanol

The present paper deals with the potential of employing Malaise traps for collecting butterflies and moths for morphological analysis and presents a protocol for preparing Macrole…

Developing a vocabulary and ontology for modeling insect natural history data: example data, use cases, and competency …

Insects are possibly the most taxonomically and ecologically diverse class of multicellular organisms on Earth. Consequently, they provide nearly unlimited opportunities to develo…

Connecting data and expertise: a new alliance for biodiversity knowledge

There has been major progress over the last two decades in digitising historical knowledge of biodiversity and in making biodiversity data freely and openly accessible. Interlocki…

A Novel Automated Mass Digitisation Workflow for Natural History Microscope Slides

The Natural History Museum, London (NHM) has embarked on an ambitious programme to digitise its collections. One aim of the programme has been to improve the workflows and infrast…

Reference DNA barcodes and other mitochondrial markers for identifying Caribbean Octocorals

DNA barcoding is a useful tool for documenting the diversity of metazoans. The most commonly used barcode markers, 16S and COI, are not considered suitable for species identificat…

Dragonfly biodiversity 90 years ago in an Alpine region: The Odonata historical collection of the MUSE (Trento, Italy)

Historical collections of natural science museums play a fundamental role in documenting environmental changes and patterns of biodiversity transformation. This considered, they s…

COPIOUS: A gold standard corpus of named entities towards extracting species occurrence from biodiversity literature

Background Species occurrence records are very important in the biodiversity domain. While several available corpora contain only annotations of species names or habitats and…

DNA barcoding data release for Coleoptera from the Gunung Halimun canopy fogging workpackage of the Indonesian Biodiver…

We present the results of a DNA barcoding pipeline that was established as part of the German-Indonesian IndobioSys project - Indonesian Biodiversity Information System. Our data …

rMyCoPortal - an R package to interface with the Mycology Collections Portal

The understanding of the biodiversity and biogeographical distribution of fungi is still limited. The small number of online databases and the large effort required to access exis…

The Mt Halimun-Salak Malaise Trap project - releasing the most species rich DNA Barcode library for Indonesia

The Indonesian archipelago features an extraordinarily rich biota. However, the actual taxonomic inventory of the archipelago remains highly incomplete and there is hardly any sig…

Wet collections accession: a workflow based on a large stonefly (Insecta, Plecoptera) donation

This study details a workflow used to accession a large stonefly (Plecoptera) collection resulting from several donations. The eastern North American material of Kenneth W. Stewar…

Modifier Ontologies for frequency, certainty, degree, and coverage phenotype modifier

Background: When phenotypic characters are described in the literature, they may be constrained or clarified with additional information such as the location or degree of expressi…

Incentivising use of structured language in biological descriptions: Author-driven phenotype data and ontology producti…

Phenotypes are used for a multitude of purposes such as defining species, reconstructing phylogenies, diagnosing diseases or improving crop and animal productivity, but most of th…

A story of data won, data lost and data re-found: the realities of ecological data preservation

This paper discusses the process of retrieval and updating legacy data to allow on-line discovery and delivery. There are many pitfalls of institutional and non-institutional ecol…

Data Leakage and Loss in Biodiversity Informatics

The field of biodiversity informatics is in a massive, “grow-out” phase of creating and enabling large-scale biodiversity data resources. Because perhaps 90% of existing biodivers…

Visualizing natural history collection data provides insight into collection development and bias

Natural history collections contain estimated billions of records representing a large body of knowledge about the diversity and distribution of life on Earth. Assessments of vari…

New records of sharks (Elasmobranchii) from the Andaman and Nicobar Archipelago in India with notes on current checklis…

The diversity of sharks occurring off the Andaman and Nicobar Archipelago in India has received increased attention in recent years. Yet, available checklists are out of date, oft…

Two species of Caiusa Surcouf (Diptera: Calliphoridae) new to India, with data on larval behaviour and morphology

Caiusa Surcouf (Diptera: Calliphoridae) is an Old World genus of blow flies, the larvae of which feed on egg masses in the foam nests of various species of rhacophorid tree frogs.…

New records of a critically endangered shrew from Mexican cloud forests (Soricidae, Cryptotis nelsoni) and prospects fo…

The Nelson´s small-eared shrew, Cryptotis nelsoni (Merriam, 1895), is a critically endangered species, endemic to cloud forests in Los Tuxtlas, a mountain range along the Gulf of …

Resolving “orphaned” non-specific structures using machine learning and natural language processing methods

Scholarly publications of biodiversity literature contain a vast amount of information in human readable format. The detailed morphological descriptions in these publications cont…

Xylella fastidiosa invasion of new countries in Europe, the Middle East and North Africa: Ranking the potential exposur…

After the recent high-impact European outbreaks of Xylella fastidiosa (Xf), a xylem-limited plant pathogenic bacterium native to the Americas, this research aims to rank the risks…

A workflow for standardising and integrating alien species distribution data

Biodiversity data are being collected at unprecedented rates. Such data often have significant value for purposes beyond the initial reason for which they were collected, particul…

Origin of climatic data can determine the transferability of species distribution models

Methodological research on species distribution modelling (SDM) has so far largely focused on the choice of appropriate modelling algorithms and variable selection approaches, but…

Pet or pest? Stable isotope methods for determining the provenance of an invasive alien species

The illegal pet trade facilitates the global dispersal of invasive alien species (IAS), providing opportunities for new pests to establish in novel recipient environments. Despite…

Predicting the invasion range for a highly polyphagous and widespread forest herbivore

Here we compare the environmental niche of a highly polyphagous forest Lepidoptera species, the winter moth (Operophtera brumata), in its native and invaded range. During the last…

The potential current distribution of the coypu (Myocastor coypus) in Europe and climate change induced shifts in the n…

The coypu (Myocastor coypus) is a semi-aquatic rodent native to South America which has become invasive in Europe and other parts of the world. Although recently listed as species…

Pathologists and entomologists must join forces against forest pest and pathogen invasions

The world’s forests have never been more threatened by invasions of exotic pests and pathogens, whose causes and impacts are reinforced by global change. However, forest entomolog…

Assessing the probability of freedom from pine wood nematode based on 19 years of surveys

Many quarantine pests, such as the pine wood nematode (PWN, Bursaphelenchus xylophilus), are surveyed annually in all EU countries. Although a lot of resources are spent in the su…

Perceptions of alien plants and animals and acceptance of control methods among different societal groups

Biological invasions are a widespread phenomenon and cause substantial impacts on the natural environment and human livelihoods. Thus, the European Union (EU) recently adopted Reg…

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